sudo apt-get remove docker docker-engine docker.io containerd runc
sudo apt-get update
sudo apt-get install apt-transport-https ca-certificates curl gnupg lsb-release
curl -fsSL https://download.docker.com/linux/ubuntu/gpg | sudo g pg --dearmor -o /usr/share/keyrings/docker-archive-keyring.gpg
echo "deb [arch=amd64 signed-by=/usr/share/keyrings/docker-archive-keyring.gpg] https://download.docker.com/linux/ubuntu \
$(lsb_release -cs) stable" | sudo tee /etc/apt/sources.list.d/docker.list > /dev/null
sudo apt-get update
sudo apt-get install docker-ce docker-ce-cli containerd.io
# Check that docker works
sudo docker run hello-world
sudo service docker status
Edit /etc/systemd/system/multi-user.target.wants/docker.service
and change the line that starts with ExecStart as:
ExecStart=/usr/bin/dockerd -H tcp://0.0.0.0:2375 -H unix:///var/run/docker.sock -H fd:// --containerd=/run/containerd/containerd.sock
Then reload systemctl & restart the docker service:
sudo systemctl daemon-reload
sudo systemctl restart docker.service
sudo systemctl status docker.service
Check that port 2375 is listened to:
ss -tunapl | grep 2375
# should output
# tcp LISTEN 0 4096 *:2375 *:*
sudo apt install -y debian-keyring debian-archive-keyring apt-transport-https
curl -1sLf 'https://dl.cloudsmith.io/public/caddy/stable/gpg.key' | sudo apt-key add -
curl -1sLf 'https://dl.cloudsmith.io/public/caddy/stable/debian.deb.txt' | sudo tee /etc/apt/sources.list.d/caddy-stable.list
sudo apt update
sudo apt install caddy
# check that caddy works
caddy version
/etc/caddy/Caddyfile
# The Caddyfile is an easy way to configure your Caddy web server.
shiva.ciml.univ-amu.fr {
# Set this path to your site's directory.
# root * /usr/share/caddy
# Enable the static file server.
file_server
# Another common task is to set up a reverse proxy:
reverse_proxy 127.0.0.1:8080
}
# Refer to the Caddy docs for more information:
# https://caddyserver.com/docs/caddyfile
sudo apt install openjdk-8-jre-headless
# Must be 1.8
java -version
/opt/shinyproxy directorycd opt/
sudo mkdir shinyproxy
cd shinyproxy/
sudo chown $USER .
sudo chgrp docker .
(see https://shinyproxy.io/documentation/deployment/#deb-package)
wget https://www.shinyproxy.io/downloads/shinyproxy_2.5.0_amd64.deb
sudo dpkg -i shinyproxy_2.5.0_amd64.deb
# could be cleaner I know
sudo apt --fix-broken install
This is /etc/systemd/system/shinyproxy.service
[Unit]
Description=ShinyProxy
After=syslog.target network.target
[Service]
Type=simple
# I changed the username & group
User=admincenturi
Group=docker
WorkingDirectory=/etc/shinyproxy
ExecStart=/usr/bin/java -jar /opt/shinyproxy/shinyproxy.jar
KillMode=process
StandardOutput=journal
StandardError=journal
SuccessExitStatus=143
[Install]
WantedBy=multi-user.target
The configuration is done through: /opt/shinyproxy/application.yml
proxy:
title: CIML Shiny Server
logo-url: http://www.ciml.univ-mrs.fr/themes/custom/ciml_theme/logo.svg
landing-page: /
heartbeat-rate: 10000
heartbeat-timeout: 60000
port: 8080
authentication: simple
admin-groups: scientists
# Example: 'simple' authentication configuration
users:
- name: admincenturi
password: XXXX
groups: scientists
- name: testuser
password: XXXX
groups: scientists
# Docker configuration
docker:
cert-path: /home/none
url: http://localhost:2375
port-range-start: 20000
specs:
- id: 01_hello
display-name: Hello Application
description: Application which demonstrates the basics of a Shiny app
container-cmd: ["R", "-e", "shinyproxy::run_01_hello()"]
container-image: openanalytics/shinyproxy-demo
access-groups: scientists
- id: 02_shiva
display-name: Shiva
container-cmd: ["R", "-e", "shiny::runApp('/root/Shiva', host='0.0.0.0', port=3838)"]
container-image: shiva
access-groups: scientists
logging:
file:
shinyproxy.log
level:
DEBUG
sudo docker pull openanalytics/shinyproxy-demo
docker load -i shiva.tar
sudo systemctl daemon-reload
sudo systemctl restart shinyproxy.service
sudo systemctl status shinyproxy.service
That should be it!